PUREfrex®2.1 »for Forming Disulfide Bonds

Kits

Product Catalog No. Quantity SDS* Price (JPY) Instruction
PUREfrex®2.1 PF213-0.25-EX 250 µL for reaction

¥ 24000

PDF
PUREfrex®2.1 PF213-0.25-5-EX 1250 µL for reaction

¥ 108000

PDF

*- : non-hazardous chemical

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Overview

PUREfrex®1.0 was launched in 2011, then we improved the protein productivity of PUREfrex®1.0 and the upgraded version “PUREfrex®2.0 has been available since 2015.

PUREfrex®2.1 is newly launched in 2017 to make it possible for selecting a different reducing agent, while keeping other composition of PUREfrex®2.0.

Formation of a disulfide bond is an important process for folding and stability of secretory proteins such as enzymes or antibodies. A disulfide bond is usually formed by the oxidation of sulfhydryl group (SH-) of adjacent cysteine residues. Therefore, the formation efficiency of a disulfide bond depends on redox state. Additionally, disulfide bond isomerase which can catalyze the exchange of disulfide bridges may be also required for a correct pairing of cysteines.

The redox state in the reaction mixture of PUREfrex® is affected by the type of reducing agent and the ratio of reducing and oxidizing agent. PUREfrex®2.0 contains dithiothreitol (DTT) in Solution I as reducing agent. In contrast, it is possible to select a suitable reducing agent for the protein of your interest by using PUREfrex®2.1, in which reducing agent is not added to Solution I. PUREfrex®2.1 includes Solution I neither DTT nor Cysteine. Each solution of cysteine, DTT and reduced glutathione (GSH) is attached to the kit independently. Other reducing agents such as 2-mercaptoethanol can be also used.

Related products

When your protein needs an assistance of molecular chaperone or a formation of a disulfide bond to form a correct conformation, we have supplemental reagents by simply adding to PUREfrex®2.1.

Supplements – Chaperones –

This is supplement for PUREfrex® which is molecular chaperone to be aggregate-prone protein in a soluble form.

DnaK Mix (#PF003-0.5-EX)
GroE Mix (#PF004-0.5-EX)

Supplements – Forming disulfide bonds –

This is supplement for synthesizing proteins containing disulfide bonds in an active form.

DsbC Set (#PF005-0.5-EX)
PDI Set (#PF006-0.5-EX)

Applications

Applications showed in below indicate that the selection of the suitable reducing agent and its ratio with oxidizing agent is very important to synthesize a protein containing disulfide bonds with an active form.

Synthesis of E.coli acid phosphatase (AppA)

AppA contains four consecutive and one nonconsecutive disulfide bonds. Its productivity and enzyme activity were compared when it was synthesized using PUREfrex®2.1 with DTT or GSH as reducing agent.

AppA was synthesized with PUREfrex®2.1 and DS supplement at 37 °C for 4 hours. As a result, the productivity was almost the same under different redox state, but the product synthesized with 4 mM GSH and 2 mM GSSG showed the highest activity.

 

AppA activity

Synthesis of IgG

Active immunoglobulin G (IgG) forms a “Y”-shaped conformation, which consists of two heavy chains (HC) and two light chains (LC) connected by disulfide bonds. The productivity of HC and LC and the formation efficiency of Y-shaped IgG were compared when they were synthesized using PUREfrex®2.1 with different reducing agents.

HC and LC were synthesized in the single tube with PUREfrex®2.1, DsbC Set and DnaK Mix at 37 °C for 16 hours. As a result, although the synthesis amounts of HC and LC were almost the same, the formation efficiency of IgG was different depending on the reducing agent.

Please visit our web site to download the poster titled “Development of a method for the synthesis of aglycosylated full-length IgG using PUREfrex [2017]” for more details.
https://www.genefrontier.com/en/downloads/purefrex/

Contents

Reagent Quantity Description Storage*1
Solution I 100 μL Amino acids, NTPs, tRNAs and substrates for enzymes etc. -20 °C
Solution II 12.5 μL Proteins in 30 % glycerol buffer -20 °C or -80 °C *2
Solution III 25 μL Ribosome (20 μM) -80 °C *2
Cysteine 20 μL Cysteine (10 mM) -20 °C
DTT 20 μL Dithiothreitol (40 mM) -20 °C
GSH 20 μL Reduced glutathione (80 mM) -20 °C
DHFR DNA*3
(text)
10 μL PCR product containing a gene encoding dihydrofolate reductase (DHFR) from E.coli as a positive control. (20ng/μL) -20 °C

*1) Indicated temperature shows storage temperature after opening the kit. Please store the kit at -80 °C before opening.
*2) The rest of solution should be frozen rapidly in liquid nitrogen or dry ice/ethanol, and be stored at -80 °C. Divide into aliquots, if necessary, and avoid refreeze and thaw as much as possible.
*3) For synthesizing DHFR, add 1 µL of DHFR DNA to 20 µL of reaction.

Protocol

This is a standard protocol for synthesizing proteins containing disulfide bonds. Therefore DsbC Set is also used with PUREfrex®2.1. GSSG and DsbC are included in DsbC Set. When you synthesize proteins without disulfide bonds, please add DTT instead of GSH and no DsbC Set.

  1. Thaw Solution I, Cysteine, GSH and GSSG by incubation at room temperature or 37 °C for 1 minute for completely dissolving, and then cool on ice.
  2. Thaw Solution II, III and DsbC on ice.
  3. Mix each solution by vortex and centrifuge briefly to collect solution at the bottom.
  4. Assemble the reaction mixture in a tube as follows. Add the template DNA to 1 – 3 ng/µL per 1 kb.
    Water 5-X μL
    Solution I 8 μL*1
    10 mM Cysteine 1 μL
    80 mM GSH 1 μL
    60 mM GSSG 1 μL
    Solution II 1 μL
    Solution III 2 μL
    80 µM DsbC *2 1 μL
    Template DNA*3 X μL
    Total 20 μL
  5. Incubate the tube at 37 °C for 2 – 6 hours with heat block or water bath.
    Protein synthesis reaction is almost done until 6 hours, but some proteins require longer incubation (e.g. 24 hours) to form disulfide bonds between the correct pair of cysteine residues.
  6. Analyze or use the synthesized products.

*1 : This volume is different from Solution I of PUREfrex®2.0.
*2 : DsbC is diluted with Dilution buffer included in DsbC Set.
*3 : Please visit the template DNA preparation site.

Note

PUREfrex® is developed for in vitro research only. PUREfrex® should not be used for therapy, diagnostic or administration to animals including human and should not be used as food or cosmetics etc. To avoid the contamination of nuclease, nuclease-free-treated water, reagents and materials should be used. We also recommend wearing gloves and mask.

“PUREfrex® is Registered in U.S. Patent and Trademark Office”